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[3.363946,"o","WARN chat                   cannot run yet: no model target is configured; run `clio-coder configure` to choose one\r\nOK   Clio Coder version     0.8.0\r\nOK   install method         npm (/opt/clio-coder/lib/node_modules/@iowarp/clio-coder; npm global; follows latest through npm; update after exit off (prefix not user-writable))\r\nOK   node version           v24.20.0\r\nOK   platform               linux-x64\r\nOK   engine runtime         ready\r\nOK   directory layout       config, data, state, and cache roots are absolute, distinct, and non-nesting\r\nOK   config dir             /home/researcher/.config/clio-coder\r\nOK   data dir               /home/researcher/.local/share/clio-coder\r\nOK   state dir              /home/researcher/.local/state/clio-coder\r\nOK   cache dir              /home/researcher/.cache/clio-coder\r\nOK   state dir mode         tightened to 700\r\nOK   data dir mode          tightened to 700\r\nOK   settings.yaml          /home/researcher/.config/clio-coder/settings.yaml\r\nOK   credentials            600\r\nOK   state metadata         0.8.0 (repaired 2026-11-13T00:17:01.419Z)\r\nOK   lifecycle migrations   9 registered, all recorded\r\nOK   session store          /home/researcher/.local/state/clio-coder/sessions (no sessions recorded)\r\nINFO telemetry              mode standard; research capture off; 0 workspace consents recorded\r\nOK   installation files     build outputs present\r\nOK   local worker capacity  24 usable CPUs, 19.7 GiB available memory; 8 local workers (built-in safety cap). GPU/VRAM and model fit are not checked.\r\nOK   state storage          121 B (121 bytes); largest contributor home.json at 121 B (121 bytes)\r\nOK   home storage           config 8.3 KB, data 0 B, cache 0 B\r\nOK   interop pi             version unknown (no ACP recipe) at /opt/node/bin/pi\r\nINFO external tool asciinema not found (install with `clio-coder tools install asciinema`)\r\nWARN external tool herdr    pane host 0.9.5 is not installed; run `clio-coder panes install`\r\nOK   external tool yazi     experimental integration disabled by settings\r\nINFO external tool croc     not found (install with `clio-coder tools install croc`)\r\nINFO external tool cliamp   not found (install with `clio-coder tools install cliamp`)\r\nOK   files pane profile     disabled by settings\r\nOK   pdf attachments        /usr/bin/pdftotext: pdftotext version 24.02.0; pdfinfo /usr/bin/pdfinfo\r\nOK   toolchain              found: cc, c++, gfortran, mpicc, mpicxx, mpirun, cmake, make, python3; not on PATH: clang, nvcc, ninja, meson, sbatch\r\nINFO slurm mcp              not set up: clio-kit, sbatch, and squeue are not on PATH and no mcp.yaml declares the Slurm server; see docs/guide/slurm.md\r\nOK   store backend          local (no selection; the default)\r\nOK   store root             /home/researcher/.local/share/clio-coder/store (not created yet; 420.5 GiB free at /home/researcher/.local/share/clio-coder)\r\nOK   panes mode             Clio's private pane host opens with bare `clio-coder`; this command is not running inside one\r\nOK   panes layout           off\r\nOK   naming                 clean: immutable history, git refs, worktree markers\r\nOK   validation contract    none at the workspace root; rigor default normal\r\nOK   shell sandbox          default-autonomy shell commands run in the bwrap sandbox; writable roots: /home/researcher, /tmp, /var/tmp, /home/researcher/.cache/clio-coder/sandbox-cache; 7 secret files in the workspace and scratch roots are masked; unix sockets: a seccomp filter refuses new AF_UNIX sockets (socketpair still works) and the kernel keyring calls; yolo runs contained in the same sandbox\r\n17 rows folded; `clio-coder doctor --verbose` prints each one\r\n"]
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[6.820316,"o","WARN chat                   cannot run yet: no model target is configured; run `clio-coder configure` to choose one\r\nOK   Clio Coder version     0.8.0\r\nOK   install method         npm (/opt/clio-coder/lib/node_modules/@iowarp/clio-coder; npm global; follows latest through npm; update after exit off (prefix not user-writable))\r\nOK   node version           v24.20.0\r\nOK   platform               linux-x64\r\nOK   engine runtime         ready\r\nOK   directory layout       config, data, state, and cache roots are absolute, distinct, and non-nesting\r\nOK   config dir             /home/researcher/.config/clio-coder\r\nOK   data dir               /home/researcher/.local/share/clio-coder\r\nOK   state dir              /home/researcher/.local/state/clio-coder\r\nOK   cache dir              /home/researcher/.cache/clio-coder\r\nOK   settings.yaml          /home/researcher/.config/clio-coder/settings.yaml\r\nOK   credentials            600\r\nOK   state metadata         0.8.0 (repaired 2026-11-13T00:17:01.419Z)\r\nOK   lifecycle migrations   9 registered, all recorded\r\nOK   session store          /home/researcher/.local/state/clio-coder/sessions (no sessions recorded)\r\nINFO telemetry              mode standard; research capture off; 0 workspace consents recorded\r\nOK   installation files     build outputs present\r\nOK   local worker capacity  24 usable CPUs, 19.4 GiB available memory; 8 local workers (built-in safety cap). GPU/VRAM and model fit are not checked.\r\nOK   state storage          121 B (121 bytes); largest contributor home.json at 121 B (121 bytes)\r\nOK   home storage           config 8.3 KB, data 0 B, cache 60.3 KB\r\nOK   interop pi             version unknown (no ACP recipe) at /opt/node/bin/pi\r\nINFO external tool asciinema not found (install with `clio-coder tools install asciinema`)\r\nWARN external tool herdr    pane host 0.9.5 is not installed; run `clio-coder panes install`\r\nOK   external tool yazi     experimental integration disabled by settings\r\nINFO external tool croc     not found (install with `clio-coder tools install croc`)\r\nINFO external tool cliamp   not found (install with `clio-coder tools install cliamp`)\r\nOK   files pane profile     disabled by settings\r\nOK   pdf attachments        /usr/bin/pdftotext: pdftotext version 24.02.0; pdfinfo /usr/bin/pdfinfo\r\nOK   toolchain              found: cc, c++, gfortran, mpicc, mpicxx, mpirun, cmake, make, python3; not on PATH: clang, nvcc, ninja, meson, sbatch\r\nINFO slurm mcp              not set up: clio-kit, sbatch, and squeue are not on PATH and no mcp.yaml declares the Slurm server; see docs/guide/slurm.md\r\nOK   store backend          local (no selection; the default)\r\nOK   store root             /home/researcher/.local/share/clio-coder/store (not created yet; 420.5 GiB free at /home/researcher/.local/share/clio-coder)\r\nOK   panes mode             Clio's private pane host opens with bare `clio-coder`; this command is not running inside one\r\nOK   panes layout           off\r\nOK   naming                 clean: immutable history, git refs, worktree markers\r\nOK   validation contract    none at the workspace root; rigor default normal\r\nOK   shell sandbox          default-autonomy shell commands run in the bwrap sandbox; writable roots: /home/researcher, /tmp, /var/tmp, /home/researcher/.cache/clio-coder/sandbox-cache; 7 secret files in the workspace and scratch roots are masked; unix sockets: a seccomp filter refuses new AF_UNIX sockets (socketpair still works) and the kernel keyring calls; yolo runs contained in the same sandbox\r\n17 rows folded; `clio-coder doctor --verbose` prints each one\r\n"]
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